Copyright (c) 2012, Washington University, Saint Louis, Missouri.
All rights reserved.

Redistribution and use in source and binary forms, with or without modification,
are permitted provided that the following conditions are met:

* Redistributions of source code must retain the above copyright notice, this
  list of conditions and the following disclaimer.

* Redistributions in binary form must reproduce the above copyright notice, this
  list of conditions and the following disclaimer in the documentation and/or
  other materials provided with the distribution.

THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR
ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.


BIOQ USES THE FOLLOWING SOFTWARE COMPONENTS IN ACCORDANCE WITH THEIR GIVEN
LICENSES. In the event of a conflict between the conditions and obligations
above and the terms and conditions of the licenses for the software components
below (“Third Party Licenses”), the terms and conditions of such Third Party
Licenses will prevail:


SCRIPTING AND DATABASE SOFTWARE
-------------------------------

Perl
----

http://dev.perl.org/licenses

LICENSE: GNU General Public License


PHP
---

http://www.php.net/license/3_01.txt

LICENSE:PHP license, version 3.01


MySQL
-----

http://www.mysql.com/about/legal/licensing/index.html

LICENSE: GPL


OTHER SOFTWARE, PLUGINS AND MODULES
-----------------------------------


GraphViz
--------

A standalone application used by BioQ.

http://www.graphviz.org/License.php

LICENSE: Eclipse Public License - v 1.0


Net::FTP
--------

A Perl module.

http://search.cpan.org/~gbarr/libnet-1.22/Net/FTP.pm

LICENSE: Copyright (c) 1995-2004 Graham Barr. All rights reserved. This program is free
software; you can redistribute it and/or modify it under the same terms as Perl
itself.


Spreadsheet::WriteExcel
-----------------------

A Perl module.

http://search.cpan.org/~jmcnamara/Spreadsheet-WriteExcel-2.37/lib/Spreadsheet/WriteExcel/Big.pm

LICENSE: © MM-MMX, John McNamara. All Rights Reserved. This module is free
software. It may be used, redistributed and/or modified under the same terms as
Perl itself.


Proc::Simple
------------

A Perl module.

http://search.cpan.org/~mschilli/Proc-Simple-1.30/Simple.pm

LICENSE: Copyright 1996-2011 by Mike Schilli, all rights reserved. This program
is free software, you can redistribute it and/or modify it under the same terms
as Perl itself.


XML::XPath
----------

A Perl module.

http://search.cpan.org/~msergeant/XML-XPath-1.13/XPath.pm

LICENSE: This module is copyright 2000 AxKit.com Ltd. This is free software, and
as such comes with NO WARRANTY. No dates are used in this module. You may
distribute this module under the terms of either the Gnu GPL, or the Artistic
License (the same terms as Perl itself).


XML::XPath::Parser
------------------

A Perl module.

http://search.cpan.org/~msergeant/XML-XPath-1.13/

LICENSE: This module is copyright 2000 AxKit.com Ltd. This is free software, and
as such comes with NO WARRANTY. No dates are used in this module. You may
distribute this module under the terms of either the Gnu GPL, or the Artistic
License (the same terms as Perl itself).


DBI
---

A Perl module.

http://search.cpan.org/~timb/DBI-1.622/DBI.pm

LICENSE: The DBI module is Copyright (c) 1994-2012 Tim Bunce. Ireland. All
rights reserved. You may distribute under the terms of either the GNU General
Public License or the Artistic License, as specified in the Perl 5.10.0 README
file.


jQuery and jQuery UI
--------------------

JavaScript plugins.

http://jquery.org/license/

LICENSES: MIT and GPL


jqGrid 4.3.3
------------

A JavaScript plugin.

http://www.trirand.com/

LICENSE: released under GPL and MIT licenses.


AjaxUpload 3.2
--------------

A JavaScript plugin.

http://www.zurb.com/playground/ajax_upload

LICENSE: Copyright ZURB, freely available for distribution under the MIT license


SyntaxHighlighter 3.0.83
------------------------

A JavaScript plugin.

http://alexgorbatchev.com/SyntaxHighlighter 

LICENSE: Copyright 2004-2011 Alex Gorbatchev